Y. Cao is supported by National Natural Science Foundation of China (31401130 to Y.C.) . Z. Miao is supported by the French Government grant ANR-10-BINF-02-02 " BACNET ".
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Ramachandran Plots
+ shows F240 of 4bthB (φ= 0.00, ψ= 0.00) in the Ramachandran Plots of two amino acids x shows Y24 of 3l91B (φ= 0.00, ψ= 0.00) in the Ramachandran Plots of two amino acids
Allowed regions (red) for PHE
Allowed regions (red) for TYR
Ramachandran Plots illustrate the backbone dihedral angles (ψ, φ) which are possible for an amino-acid residue in a protein. (ψ,φ) outside the colored regions are of very low possibilities in real proteins.
The deeper the color, the higher the possiblilities (more favorable).
Residue substitution may result in the original (ψ, φ) out of allowed regions. In this case, protein backbone may be alternated to another (ψ, φ). Please note the distance between '+' and 'x' versus the colored regions of their location.
One of our study (in preparation) shows that the changes of Ramachandran probabilities have significant correlation with backbone displacement upon residue substitutions.
Ramachandran Plots obtained the Ramachandran probabilities from Dunbrack Lab.